Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.

نویسندگان

  • Thomas R M Barends
  • Lutz Foucar
  • Albert Ardevol
  • Karol Nass
  • Andrew Aquila
  • Sabine Botha
  • R Bruce Doak
  • Konstantin Falahati
  • Elisabeth Hartmann
  • Mario Hilpert
  • Marcel Heinz
  • Matthias C Hoffmann
  • Jürgen Köfinger
  • Jason E Koglin
  • Gabriela Kovacsova
  • Mengning Liang
  • Despina Milathianaki
  • Henrik T Lemke
  • Jochen Reinstein
  • Christopher M Roome
  • Robert L Shoeman
  • Garth J Williams
  • Irene Burghardt
  • Gerhard Hummer
  • Sébastien Boutet
  • Ilme Schlichting
چکیده

The hemoprotein myoglobin is a model system for the study of protein dynamics. We used time-resolved serial femtosecond crystallography at an x-ray free-electron laser to resolve the ultrafast structural changes in the carbonmonoxy myoglobin complex upon photolysis of the Fe-CO bond. Structural changes appear throughout the protein within 500 femtoseconds, with the C, F, and H helices moving away from the heme cofactor and the E and A helices moving toward it. These collective movements are predicted by hybrid quantum mechanics/molecular mechanics simulations. Together with the observed oscillations of residues contacting the heme, our calculations support the prediction that an immediate collective response of the protein occurs upon ligand dissociation, as a result of heme vibrational modes coupling to global modes of the protein.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

The Effect of Cu Impurity on the CO-dissociation Mechanism on the Fe (100) Surface: A Full Potential DFT Study

In this study, the theoretical calculations of CO dissociation were carried out on Cu-Fe alloy surface by a full-potential method, which made more accurate results especially on the prediction of adsorption energies. This process may be governed by either a direct route or a H-assisted via HCO and COH intermediates pathways. In comparison to the pure surface Fe (100), the presence of Cu atom en...

متن کامل

Q&A. Shining a light on sexual harassment in astronomy.

379 THE UNKNOWNS OF COGNITIVE ENHANCEMENT Can science and policy catch up with practice? By M. J. Farah Science Staff ..............................................358 New Products ............................................ 460 AAAS Meeting Program ............................ 461 Science Careers ......................................... 471 369 381 SNAPSHOTS OF A PROTEIN QUAKE Release of CO ...

متن کامل

Two-dimensional IR spectroscopy of protein dynamics using two vibrational labels: a site-specific genetically encoded unnatural amino acid and an active site ligand.

Protein dynamics and interactions in myoglobin (Mb) were characterized via two vibrational dynamics labels (VDLs): a genetically incorporated site-specific azide (Az) bearing unnatural amino acid (AzPhe43) and an active site CO ligand. The Az-labeled protein was studied using ultrafast two-dimensional infrared (2D IR) vibrational echo spectroscopy. CO bound at the active site of the heme serves...

متن کامل

Dynamics of proteins: elements and function.

INTRODUCTION ........................................................................................................ 263 OVERVIEW .................................................................................................................. 265 DYNAMICS ETHODOLOGY ................................................................................ 268 Molecular Dynamics ..........................

متن کامل

Unveiling functional protein motions with picosecond x-ray crystallography and molecular dynamics simulations.

A joint analysis of all-atom molecular dynamics (MD) calculations and picosecond time-resolved x-ray structures was performed to gain single-molecule insights into mechanisms of protein function. Ensemble-averaged MD simulations of the L29F mutant of myoglobin after ligand dissociation reproduce the direction, amplitude, and time scales of crystallographically determined structural changes. Thi...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Science

دوره 350 6259  شماره 

صفحات  -

تاریخ انتشار 2015